Genetic Diversity of Rosa Damascena Mill. in Latakia Province as Reveled by ISSR Analysis
International Journal of Agriculture & Environmental Science |
© 2018 by SSRG - IJAES Journal |
Volume 5 Issue 6 |
Year of Publication : 2018 |
Authors : Tharwat Redwan, Mazen Nassour, Hafez Mahfoud |
How to Cite?
Tharwat Redwan, Mazen Nassour, Hafez Mahfoud, "Genetic Diversity of Rosa Damascena Mill. in Latakia Province as Reveled by ISSR Analysis ," SSRG International Journal of Agriculture & Environmental Science, vol. 5, no. 6, pp. 18-22, 2018. Crossref, https://doi.org/10.14445/23942568/IJAES-V5I6P104
Abstract:
The genetic relationships among 20 Rosa damascena Mill. accessions from various cultivation areas of Latakia province (Syria) and two accessions from type locality Al-Marah were analyzed using 10 ISSR primers. The ISSR primers produced 63 bands across the studied genotypes, of which 46 were polymorphic. The number of amplified bands varied from three to eight. The average numbers of bands per primer was 6.3 band. Percentage polymorphism ranged from 50% (ISSR-R9) to 100% (ISSR-D4, ISSR-R2), with an average percentage polymorphism of 73.02% across all the genotypes. Unweighted pair group method cluster analysis based on similarity values revealed 3 groups at the distance of dissimilarity 0.38. One includes 16 genotypes all from Latakia city, second cluster comprised all Gablah and Alkardaha genotypes, while Damascus genotypes (Al-Marah ) formed the third group and appeared to be distinct from all others. The wide genetic variation seen for R. damascena Mill. genotypes included in our study is a promising future for the breeding programs of rose.
Keywords:
Rosa damascena, Molecular characterization, ISSR, Cluster analysis
References:
[1] V. Wissemann, Conventional taxonomy of wild roses. In: Roberts A. Debener, T. Gudin Seds, Encyclopedia of rose science. London, Elsevier, pp. 111–117, 2003.
[2] A. Schanzer Ivan, and V. Alina, “ISSR (Inter Simple Sequence Repeat) markers reveal natural intersectional hybridization in wild roses [Rosa L., sect. Caninae (DC.) Ser. and sect. Cinnamomeae (DC.) Ser],” Wulfenia., vol. 14, pp. 1–14, 2007.
[3] Z. Jabbarzadeh, M. Khosh-khui, H. Salehi, and A. Saberivand, “Inter simple sequence repeat (ISSR) markers as reproducible and specific tools for genetic diversity analysis of rose species,” Afr. J. Biotechnol, vol. 9(37), pp. 6091-6095, 2010.
[4] P. M. Widrlechner, “History and utilization of Rosa damascena. ,” Economic Botany, vol. 35(1), pp. 42-58, 1981.
[5] S. A. Bazaid, “Protein and DNA fragments variation in relation to low temperature in four Rosa hybirida cultivars in Taif, Saudi Arabia,” J. Egypt. Acad. Dev, vol. 5, pp. 77-90, 2004.
[6] C. Teyssier, S. Reynders-Aloisi, and Y. Jacob, “Characterization of collection of botanical rose trees by phenotypic data analysis,” Act Hort, vol. 424, pp. 305-307, 1996.
[7] J. Welsh, and M. McClelland, “Fingerprinting genomes using PCR with arbitray primers,” Nucleic Acids Res, vol. 18, pp. 7213-7218, 1990.
[8] S. Panwar, P. K. Singh, H. Sonah, P. K. Deshmukh, K. V. Prasad, and T. R. Sharma, “Molecular fingerprinting and assessement of genetic diversity in rose (Rosa X hybrida),” Indian Journal of Biotechnology, vol, 14, pp. 518-524, 2015.
[9] N. Mirali, R. Aziz, and I. Nabulsi, “Genetic characterization of Rosa damascena species growing in different regions of Syria and its relationship to the quality of the essential oils,” Int. J. Med. Arom. Plants, vol, 2(1), pp. 41-52, 2012.
[10] N. Y. Baydar, H. A. Baydar, and T. N. Debener, “Analysis of genetic relationships among Rosa damascena Mill. plants grown in Turkey by using AFLP and italic microsatellite markers,” J. Biotechnology, vol, 110, pp. 262 – 266, 2004.
[11] X. P. Wen, X. M. Pang, and X. X. Deng, “Characterization of genetic relationships of Rosa roxburghii Tratt and its relatives using morphological traits, RAPD and AFLP markers,” The Journal of Horticultural Science and Biotechnology, vol.79 (2), pp. 189-196, 2015.
[12] A. Y. Aldhebiani, N. S. Al Saud, W. A. Yaslam, and S. M. Hassan, “Mplecular characterization of Rosa damascena Mill. growing in Taif and Almadinah using ISSR and SSR markers,” Res. J. Biotech, vol. 13(1), pp. 11-19, 2018.
[13] K. Wu, R. Jones, L. Dannaeberger, and P. A. Scolnik, “Detection of microsatellite polymorphisms without cloning,” Nucleic Acids Res, vol. 22, pp. 3257-3258, 1994.
[14] M. P. Reddy, N. Saria, and E. A. Siddiq, “Inter-Simple sequence repeat (ISSR) polymorphism and its application in plant breeding,” Euphytica, vol. 128, pp. 9-17, 2002.
[15] S. Moreno, J. P. Martin, and J. M. Ortiz, “Inter-Simple sequence repeat PCR for characterization of closely related grapevine germplasm,” Euphytica, vol. 101(1), pp. 117-125, 1998.
[16] S. Ghariani, N. Trifi-Farah, M. Chakroun, S. Marghali, and M. Marrakchi, “Genetic diversity in Tunisian perennial ryegrass revealed by ISSR markers,” Genet. Resources Crop, vol. 50(8), pp. 809–815, 2003.
[17] S. E. El-Assal, A. M. El-Awady, A. El-Tarras, and G. Shehab, “Assessing the genetic relationship of Taif rose with some rose genotypes (Rosa sp.) based on random amplified polymorphic DNA, Inter simple sequence repeat and simple sequence repeat markers,” American Journal of Biochemistry and Biotechnology, vol. 10(1), pp. 88-98, 2014.
[18] S. M. Ahmad, H. Y. Darwish, and K. H. Alamer, “Microsatellite, inter simple sequence repeat and biochemical analyses of Rosa genotypes from Saudi Arabia,” African journal of biotechnology, vol. 16(12), pp. 552-557, 2017.
[19] J. J. Doyle, and J. L. Doyle, J. L, “Isolation of Plant DNA from Fresh Tissue,” Focus, vol. 12(1), pp. 13-15, 1990.
[20] F. J. Rohlf, “Numerical taxonomy and multivariant analysis system. NTSYS version 2.11a.Applied Biostatistics Inc,” New York, Stoy Book. N. Y. USA, 231, 2002.
[21] Farooq, A., Kiani M, Khan MA, Riaz A, Khan AA, Anderson N, Byrne DH. Microsatellite Analysis of Rosa damascena from Pakistan and Iran. Hortic. Environ. Biotechnol. 54(2):141-147, 2013.