Genetic Diversity of Sorghum [Sorghum bicolor (L.) Moench] Genotypes in the Central Plateau Zone of Rwanda for Qualitative Traits

International Journal of Agriculture & Environmental Science
© 2025 by SSRG - IJAES Journal
Volume 12 Issue 1
Year of Publication : 2025
Authors : Theogene Niyibigira, Wassu Mohammed, Tamado Tana, Tesfaye Lemma Tefera, Placide Rukundo
pdf
How to Cite?

Theogene Niyibigira, Wassu Mohammed, Tamado Tana, Tesfaye Lemma Tefera, Placide Rukundo, "Genetic Diversity of Sorghum [Sorghum bicolor (L.) Moench] Genotypes in the Central Plateau Zone of Rwanda for Qualitative Traits," SSRG International Journal of Agriculture & Environmental Science, vol. 12,  no. 1, pp. 14-27, 2025. Crossref, https://doi.org/10.14445/23942568/IJAES-V12I1P103

Abstract:

Sorghum is a key cereal in Rwanda, ranking second after maize. However, climate change, pests, and diseases contribute to low yields. To improve its yield, a study was conducted in the central plateau zone of Rwanda to evaluate the genetic diversity of 36 sorghum genotypes based on qualitative traits for the identification of drought-tolerant genotypes to use in future breeding programs. The field experiment was conducted in a simple lattice design at Rubona Research Station, and 10 traits were studied. The descriptive results identified the umuceri genotype with very slight senescence, indicating its possible tolerance to drought. Among collection origins, the Ruhango district recorded the highest diversity index of 0.81 (tillering capacity). For all genotypes, Shannon-Weaver results showed nine polymorphic traits, with tillering capacity (0.96) having a high diversity index. The genotypes showed a diversity index ranging between 0.51 (midrib color) and 0.91 (inflorescence shape) within the collection origins and between 0.09 (inflorescence shape) and 0.49 (midrib color) among the collection origins. Principal component analysis revealed four major components explaining 78.64% of the total variation. Clustering analysis grouped the 36 sorghum genotypes into five main clusters, showing the genotype Umuceri being the most distant and potentially valuable for future sorghum improvement programs.

Keywords:

Cereals in Rwanda, Diversity index, Drought tolerant, Shannon-Weaver, Sorghum genotypes.

References:

[1] John Milton Poehlman, Breeding Field Crops, Avi Publishing Company, pp. 1-427, 1977.
[Google Scholar] [Publisher Link]
[2] C. Wayne Smith, and Richard A. Frederiksen, Sorghum: Origin, History, Technology, And Production, John Wiley and Sons, pp. 1-840, 2000.
[Google Scholar] [Publisher Link]
[3] Ameer Bibi et al., “Physiological Markers for Screening Sorghum (Sorghum Bicolor) Germplasm under Water Stress Condition,” International Journal of Agriculture and Biology, vol. 12, no. 3, pp. 451-455, 2010.
[Google Scholar] [Publisher Link]
[4] Wubshet Mamo et al., “Genetic Diversity and Population Structure of Sorghum [Sorghum Bicolor (L.) Moench] Genotypes in Ethiopia as Revealed by Microsatellite Markers,” Heliyon, vol. 9, no. 1, pp. 1-12, 2023.
[Google Scholar] [Publisher Link]
[5] Laura M. Pereira, and Corinna Hawkes, “Leveraging the Potential of Sorghum as a Healthy Food and Resilient Crop in the South African Food System,” Frontiers Sustainable Food Systems, vol. 6, pp. 1-14, 2022.
[CrossRef] [Google Scholar] [Publisher Link]
[6] Geoffrey P. Morris et al., “Population Genomic and Genome-Wide Association Studies of Agroclimatic Traits in Sorghum,” Proceedings of the National Academy of Sciences of the United States of America, vol. 110, no. 2, pp. 453-58, 2012.
[CrossRef] [Google Scholar] [Publisher Link]
[7] Jesse R. Lasky et al., “Genome-Environment Associations in Sorghum Landraces Predict Adaptive Traits,” Science Advances, vol. 1, no. 6, 2015.
[CrossRef] [Google Scholar] [Publisher Link]
[8] Dong Zhang et al., “Genetic Analysis of Inflorescence and Plant Height Components in Sorghum (Panicoidae) and Comparative Genetics with Rice (Oryzoidae),” BMC Plant Biology, vol. 15, pp. 1-15, 2015.
[CrossRef] [Google Scholar] [Publisher Link]
[9] J.R. Harlan, and J.M.J. De Wet, “Toward a Rational Classification of Cultivated Plants,” Taxon The Journal of the International Association for Plant Taxonomy, vol. 20, no. 4, pp. 509–517, 1971.
[CrossRef] [Google Scholar] [Publisher Link]
[10] Ruyu Li et al., “Genetic Diversity in Chinese Sorghum Landraces Revealed by Chloroplast Simple Sequence Repeats,” Genetic Resources and Crop Evolution, vol. 57, pp. 1–15, 2010.
[CrossRef] [Google Scholar] [Publisher Link]
[11] L. Kong, J. Dong, and G.E. Hart, “Characteristics, Linkage-Map Positions, and Allelic Differentiation of Sorghum Bicolor (L.) Moench DNA Simple-Sequence Repeats (SSRs),” Theoretical and Applied Genetics, vol. 101, pp. 438–48, 2000.
[CrossRef] [Google Scholar] [Publisher Link]
[12] G.E. Hart et al., “Genetic Mapping of Sorghum Bicolor (L.) Moench QTLs that Control Variation in Tillering and other Morphological Characters,” Theoretical and Applied Genetics, vol. 103, pp. 1232–1242, 2001.
[CrossRef] [Google Scholar] [Publisher Link]
[13] I.D.K. Atokple, “Sorghum and Millet Breeding in West Africa in Practice,” Workshop on the Proteins of Sorghums and Millets: Enhancing Nutritional and Functional Properties for Africa, Pretoria, South Africa, pp. 1-11, 2003.
[Google Scholar]
[14] M. Jayaramachandran et al., “Comparison of Genetic Variability Induced By Γ Radiation and Tissue Culture in Sorghum,” International Journal of Bio-Resource and Stress Management, vol. 2, no. 3, pp. 329-333, 2011.
[Google Scholar] [Publisher Link]
[15] T.L. Bucheyeki et al., “Genetic Variability Characterisation of Tanzania Sorghum Landraces based on Simple Sequence Repeats (SSRS) Molecular and Morphological Markers,” African Crop Science Journal, vol. 17, no. 2, pp. 71-86, 2009.
[CrossRef] [Google Scholar] [Publisher Link]
[16] V. Ramanatha Rao, and Toby Hodgkin, “Genetic Diversity and Conservation and Utilization of Plant Genetic Resources,” Plant Cell Tissue. and Organ Culture, vol. 68, pp. 1–19, 2002.
[CrossRef] [Google Scholar] [Publisher Link]
[17] M. Govindaraj, M. Vetriventhan, and M. Srinivasan, “Importance of Genetic Diversity Assessment in Crop Plants and its Recent Advances: an Overview of its Analytical Perspectives,” Genetics Research International, vol. 2015, no. 1, pp. 1-14, 2015.
[CrossRef] [Google Scholar] [Publisher Link]
[18] S.A. Mohammadi, and B.M. Prasanna, “Analysis of Genetic Diversity in Crop Plants - Salient Statistical Tools,” Crop Science, vol. 43, no. 4, pp. 1235-1348, 2003.
[CrossRef] [Google Scholar] [Publisher Link]
[19] Francois Lyumugabe et al., “Production of Traditional Sorghum Beer "Ikigage" Using Saccharomyces Cerevisae, Lactobacillus Fermentum; Issatckenkia Orientalis, as Starter Cultures,” Food and Nutrition Sciences, vol. 5, no. 6, pp. 1-9, 2014.
[CrossRef] [Google Scholar] [Publisher Link]
[20] Chika Ezeanya-Esiobu, Vedaste Ndungutse, and Salomon Nshimyimana, “Indigenous Beverage Production and Economic Empowerment of Rural Women in Rwanda,” IK: Other Ways of Knowing, vol. 4, 2018.
[CrossRef] [Google Scholar] [Publisher Link]
[21] “Main Indicators: 5th Rwanda Population and Housing Census (PHC),” NISR (National Institute of Statistics of Rwanda), Main Indicators Report pp. 1-176, 2022.
[Publisher Link]
[22] Kemen G. Austin et al., “Impacts of Climate Change on the Potential Productivity of Eleven Staple Crops in Rwanda,” Sustainability, vol. 12, no. 10, pp. 1-12, 2020.
[CrossRef] [Google Scholar] [Publisher Link]
[23] Athanase R. Cyamweshi, John Kayumba, and Nsharwasi L. Nabahungu, “Optimizing Fertilizer Use within the Context of Integrated Soil Fertility Management in Rwanda,” Fertilizer Use Optimization In Sub-Saharan Africa, pp. 164-175, 2022.
[CrossRef] [Google Scholar] [Publisher Link]
[24] FAO (Food and Agriculture Organization of the United Nations). [Online]. Available: http://www.fao.org/faostat/en/#data/QC
[25] Charles S. Wortmann et al., Atlas of Sorghum Production in Eastern and Southern Africa and Poster- Flood- Based Livelihoods Networks, 2006. [Online]. Available: https://floodbased.org/download/246-wortmann-et-al-2006-atlas-of-sorghum-production-in-east-and-south africa-pdf/
[26] T. Niyibigira, “Transferring Striga Resistance Qtl from a Resistant Donor Source into in Rwandan Adapted Sorghum Variety,” Msc Thesis, University of Nairobi, Nairobi, Kenya, 2012.
[Google Scholar] [Publisher Link]
[27] Chris Huggings, “Climate Change Adaptation in Rwanda’s Agricultural Sector: a Case Study from Kirehe District, Eastern Province,” African Centre for Technology Studies, pp. 1-35, 2017.
[Google Scholar]
[28] Werkissa Yali Kebbede, “Genetic Variability and Divergence in Sorghum: Review,” International Journal of Research Studies in Agricultural Sciences, vol. 6, no. 5, pp. 11-20, 2020.
[CrossRef] [Google Scholar] [Publisher Link]
[29] Temesgen Begna, “Role of Sorghum Genetic Diversity in Tackling Drought Effect in Ethiopia,” International Journal of Advanced Research in Biological Sciences, vol. 8, no. 7, pp. 29-45, 2022.
[Google Scholar] [Publisher Link]
[30] Tilahun Mola, and Meseret Ejeta, “Genetic Variability of Ethiopian Sorghum [ Sorghum Bicolor ( L .) ] Landraces : Review,” International Journal of Novel Research in Life Sciences, vol. 8, no. 3, pp. 1–15, 2021.
[Google Scholar] [Publisher Link]
[31] Mihret Yirgu et al., “Morphological Variations of Qualitative Traits of Barley (Hordeum vulgare L.) Accessions in Ethiopia,” Heliyon, vol. 8, no. 10, pp. 1-12, 2022.
[CrossRef] [Google Scholar] [Publisher Link]
[32] Environment and Development, Terminology, UN (United Nations), 1992. [Online]. Available: https://digitallibrary.un.org/record/142439?ln=en&v=pdf
[33] Godwin Mangshin, G. Gana, and B.M. Munza, “Sorghum Genetic Diversity in Africa: A Mini-Review,” Journal of Current Opinion in Crop Science, vol. 2, no. 2, pp. 269-276, 2021.
[CrossRef] [Google Scholar] [Publisher Link]
[34] Herniwati Herniwati et al., “Estimation of Genetic Diversity of Sweet Sorghum (Sorghum Bicolor (L.) Moench) Genotypes as a Bioethanol Source using SSRs Markers,” Czech Journal of Genetics and Plant Breeding, vol. 60, no. 2, pp. 86-96, 2024.
[CrossRef] [Google Scholar] [Publisher Link]
[35] Charles Andiku et al., “Genetic Diversity Analysis of East African Sorghum (Sorghum Bicolor [L.] Moench) Germplasm Collections for Agronomic and Nutritional Quality Traits,” Heliyon, vol. 8, no. 6, pp. 1-12, 2022.
[CrossRef] [Google Scholar] [Publisher Link]
[36] Wedajo Gebre et al, “Genetic Diversity, Association, and Path Coefficient Analyses of Sorghum [Sorghum Bicolor (L.) Monech] Genotypes,” Scientifica, vol. 2024, no. 1, pp. 1-20, 2024.
[CrossRef] [Google Scholar] [Publisher Link]
[37] B.N. Chaithrashree et al., “Genetic Variability Studies in Sweet Sorghum [Sorghum Bicolor (L)] Genotypes for Sugar and Biomass Related Traits,” Journal of Advances in Biology & Biotechnology, vol. 27, no. 4, pp. 206-216, 2024.
[CrossRef] [Google Scholar] [Publisher Link]
[38] Shushsy Welderufael et al., “Genetic Diversity, Correlation and Genotype × Yield × Trait (GYT) Analysis of Grain Yield and Nutritional Quality Traits in Sorghum (Sorghum Bicolor [L.] Moench) Genotypes in Tigray, Northern Ethiopia,” Discover Agriculture, vol. 2, no. 4, pp. 1-15, 2024.
[CrossRef] [Google Scholar] [Publisher Link]
[39] G. Afolayan et al., “Genetic Diversity Assessment of Sorghum (Sorghum Bicolor (L.) Moench) Accessions Using Single Nucleotide Polymorphism Markers,” Plant Genetic Resources: Characterisation and Utilisation, vol. 17, no. 5, pp. 412–420, 2019.
[CrossRef] [Google Scholar] [Publisher Link]
[40] Techale Birhan et al., “Exploiting Genetic Variation from Unadapted Germplasm—An Example from Improvement of Sorghum in Ethiopia,” Plants People Planet, vol. 4, no. 5, pp. 523–536, 2022.
[CrossRef] [Google Scholar] [Publisher Link]
[41] J.W. Watson, and P.B. Eyzaguirre, “Home Gardens and In Situ Conservation of Plant Genetic Resources Home Gardens and In Situ Conservation of Plant Genetic Resources,” Proceedings of the Second International Home Gardens Workshop: Contribution of Home Gardens to in Situ Conservation of Plant Genetic Resources in Farming Systems, 2001.
[Google Scholar]
[42] R. Akatwijuka, P.R. Rubaihayo, and T.L. Odong, “Genetic Diversity among Sorghum Landraces of Southwestern Highlands of Uganda,” African Crop Science Journal, vol. 24, no. 2, pp. 179-190, 2016.
[CrossRef] [Google Scholar] [Publisher Link]
[43] Abe Shegro Gerrano et al., “Genetic Variability and Heritability Estimates of Nutritional Composition in the Leaves of Selected Cowpea Genotypes [Vigna Unguiculata (L.) Walp.],” HortScience, vol. 50, no. 10, pp. 1435-1440, 2015.
[CrossRef] [Google Scholar] [Publisher Link]
[44] Gapili Naoura et al., “Assessment of Agro-Morphological Variability of Dry-Season Sorghum Cultivars in Chad as Novel Sources of Drought Tolerance,” Scientific Reports, vol. 9, no. 1, pp. 1-12, 2019.
[CrossRef] [Google Scholar] [Publisher Link]
[45] Floride Mukamuhirwa et al., “Evaluation of Introduced Bean Genotypes for Adaptability and Root Rot Resistance in Rwanda,” International Journal of Agriculture, Environment and Bioresearch, vol. 3, no. 5, pp. 143-159, 2018.
[Publisher Link]
[46] Damien Shumbusha et al., “Phenotypic Diversity Analysis of Sweetpotato for Breeding Dual-Purpose Varieties,” Acta Agriculturae Scandinavica Section B: Soil and Plant Science, vol. 67, no. 4, pp. 340–351, 2017.
[CrossRef] [Google Scholar] [Publisher Link]
[47] Descriptors for Sorghum (Sorghum Bicolor (L.) Moench), IBPGR (International Board for Plant Genetic Resources), 1993. [Online]. Available: https://www.genesys-pgr.org/descriptorlists/6291a6d8-d034-4c16-b302-59f9e92b9cdc
[48] Claude E. Shannon, and Warren Weaver, The Mathematical Theory of Communication, University of Illinois Press, 1963.
[Google Scholar] [Publisher Link]
[49] Peter Henry Andrews Sneath, and Robert R. Sokal, Numerical Taxonomy: The Principles and Practice of Numerical Classification, W.H. Freeman, pp. 1-573, 1973.
[Google Scholar] [Publisher Link]
[50] Amelework Beyene Assefa, “Genetic Diversity Analysis of Lowland Sorghum [ Sorghum Bicolor ( L .) Moench ] Landraces under Moisture Stress Conditions and Breeding for Drought Tolerance in North Eastern Ethiopia,” PhD Thesis, University of KwaZulu-Natal, KwaZulu-Natal, Republic of South Africa, pp. 1-182, 2012.
[Google Scholar] [Publisher Link]
[51] C.P. Apunyo et al., “Diversity of Sorghum in Farmers’ Fields in Northern and Eastern Uganda,” Fifth RUFORUM Biennial Regional Conference, Cape Town , South Africa, no. 14, pp. 397-402, 2016.
[Google Scholar] [Publisher Link]
[52] Adugna Abdi et al., “Patterns of Morphological Variation of Sorghum (Sorghum bicolor (L.) Moench) Landraces in Qualitative Characters in North Shewa and South Welo, Ethiopia,” Hereditas, vol. 137, no. 3, pp. 161–72, 2002.
[CrossRef] [Google Scholar] [Publisher Link]
[53] Fitrahtunnisa, I. Mardian, and Rahmatullaila, “Performance and Utilization of Local Sorghum (Sorghum Bicolor L.) in West Nusa Tenggara,” IOP Conference Series: Earth and Environmental Science, International Conference on Sustainable Cereals and Crops Production Systems in the Tropics, Makassar City, Indonesia, vol. 484, pp. 1-8, 2019.
[CrossRef] [Google Scholar] [Publisher Link]
[54] Solomon Assefa Derese et al., “Agro-morphological Characterization and Selection of Sorghum Landraces,” Acta Agriculturae Scandinavica, Section B—Soil & Plant Science, vol. 68, no. 7, pp. 585-595, 2018.
[CrossRef] [Google Scholar] [Publisher Link]
[55] M. Sedghi et al., “Relationship between Color and Tannin Content in Sorghum Grain: Application of Image Analysis and Artificial Neural Network,” Brazilian Journal of Poultry Science, vol. 14, no. 1, pp. 57-62, 2012.
[CrossRef] [Google Scholar] [Publisher Link]
[56] Diouf Massamba et al., “Production and Use Sorghum: A Literature Review,” Journal of Nutritional Health & Food Science, vol. 4, no. 1, pp. 1–4, 2016.
[CrossRef] [Google Scholar] [Publisher Link]
[57] Esperance Habindavyi, “Morphological Characterisation of Sorghum (Sorghum Bicolor) Diversity in Burundi,” Msc Thesis, CBM Swedish Biodiversity Centre, pp. 1-49, 2009.
[Google Scholar] [Publisher Link]
[58] Adedayo Adeyanju, Ramasamy Perumal, and Tesfaye Tesso, “Genetic Analysis of Threshability in Grain Sorghum [Sorghum Bicolor (L.) Moench],” Plant Breeding, vol. 134, no. 2, pp. 148–155, 2015.
[CrossRef] [Google Scholar] [Publisher Link]
[59] Theogene Niyibigira et al., “Introgressing Striga Resistance from a Mapped Donor Source into a Rwandan Adapted Sorghum Variety,” Journal of Renewable Agriculture, vol. 1, no. 1, pp. 6-10, 2013.
[Google Scholar]
[60] Belum V.S. Reddy et al., “Evaluation of Sorghum Genotypes for the Stay-Green Trait and Grain Yield,” Journal of SAT Agricultural Research, vol. 3, no. 1, pp. 1-4, 2007.
[Google Scholar] [Publisher Link]
[61] Eduardo Pinto Mulima, “Genetic Diversity of Sorghum [Sorghum Bicolor (L.) Moench] Germplasm and Hybrid Potential under Contrasting Environments in Mozambique (Doctoral Dissertation),” PhD Thesis, University of KwaZulu-Natal, Pietermaritzburg, Republic of South Africa, pp. 1-216, 2017.
[Google Scholar] [Publisher Link]
[62] Sandra K. Truong et al., “Harnessing Genetic Variation in Leaf Angle to Increase Productivity of Sorghum Bicolor,” Genetics, vol. 201, no. 3, pp. 1229–1238, 2015.
[CrossRef] [Google Scholar] [Publisher Link]
[63] Andekelile Mwamahonje et al., “Evaluation of Traits’ Performance Contributing to Drought Tolerance in Sorghum,” Agronomy, vol. 11, no. 9, pp. 1-17, 2021.
[CrossRef] [Google Scholar] [Publisher Link]
[64] Yared Assefa, Scott A. Staggenborg, and Vara P.V. Prasad, “Grain Sorghum Water Requirement and Responses to Drought Stress : A Review,” Crop Management, vol. 9, no. 1, pp. 1-11, 2010.
[CrossRef] [Google Scholar] [Publisher Link]
[65] M.M. Alam et al., “Characterising Genetic Variation in Tillering in Sorghum,” SABRO Journal of Breeding and Genetics, vol. 41, pp. 1 13, 2009.
[Google Scholar]
[66] N. Geleta, and M.T. Labuschagne, “Qualitative Traits Variation in Sorghum [Sorghum Bicolor (L.) Moench] Germplasm from Eastern Highlands of Ethiopia,” Biodiversity and Conservation, vol. 14, pp. 3055–3064, 2005.
[CrossRef] [Google Scholar] [Publisher Link]
[67] N. Naga Durga Rao et al., “Characterization and Diversity Analysis of Rice Germplasm,” Biological Forum – An International Journal, vol. 13, no. 3a, pp. 170–79, 2021.
[Google Scholar]
[68] Amsalu Ayana, and Endashaw Bekele, “Geographical Patterns of Morphological Variation in Sorghum [Sorghum bicolor (L .) Moench] Germplasm from Ethiopia and Eritrea : Qualitative Characters,” Hereditas, vol. 129, no. 3, pp. 195–205, 1998.
[CrossRef] [Google Scholar] [Publisher Link]
[69] Thulo Sejake et al., “Phenotypic Variation of Sorghum Accessions for Grain Yield and Quality Traits,” Agronomy, vol. 12, no. 12, pp. 1 16, 2022.
[CrossRef] [Google Scholar] [Publisher Link]
[70] Hongxu Dong et al., “Natural Variation Further Increases Resilience of Sorghum Bred for Chronically Drought-Prone Environments,” Journal of Experimental Botany, vol. 73, no. 16, pp. 5730–5744, 2022.
[CrossRef] [Google Scholar] [Publisher Link]